Publications

[ Computational Optical Imaging ] [ Research ] [Sjoerd Stallinga ] [ Publications ]

Scientific papers

2014

J. Broeken, B. Rieger, and S. Stallinga
Simultaneous measurement of position and color of single fluorescent emitters using diffractive optics
Optics Letters, 39, pp. 3352-3355, 2014
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C.H. Righolt, S. Mai, L.J. van Vliet, and S. Stallinga
Three-dimensional structured illumination microscopy using Lukosz bound apodization reduces pixel negativity at no resolution cost
Optics Express
, 22, pp. 11215-11227, 2014.
C.H. Righolt, A. Guffei, H. Knecht, I.T. Young, S. Stallinga, L.J. van Vliet, and S. Mai
Differences in Nuclear DNA Organization Between Lymphocytes, Hodgkin, and Reed–Sternberg Cells Revealed by Structured Illumination Microscopy
Journal of Cellular Biochemistry
, 115, pp. 1441-1448, 2014.
B. Rieger and S. Stallinga
The lateral and axial localization uncertainty in super-resolution light microscopy
ChemPhysChem, 15, pp. 664-670, 2014.

2013  

G.M.R. De Luca, R.M.P. Breedijk, R.A.J. Brandt, C.H.C. Zeelenberg, B.E. de Jong, W. Timmermans, L.N. Azar, R.A. Hoebe, S. Stallinga, and E.M.M. Manders
Re-scan confocal microscopy: scanning twice for better resolution
Biomedical Optics Express, 4, pp. 2644-2656, 2013.
C.H. Righolt, J.A. Slotman, I.T. Young, S. Mai, L.J. van Vliet, and S. Stallinga
Image filtering in structured illumination microscopy using the Lukosz bound
Optics Express
, 21, pp. 24431-24451, 2013.
R.P.J. Nieuwenhuizen, K.A. Lidke, M. Bates, D. Leyton Puig, D. Grünwald, S. Stallinga, and B. Rieger
Measuring image resolution in optical nanoscopy
Nature Methods, 10, pp. 557-562, 2013.
S. Abrahamsson, J. Chen, B. Haij, S. Stallinga, A.Y. Katsov, J. Wisniewski, G. Mizuguchi, P. Soule, F. Mueller, C.D. Darzacq, X. Darzacq, C. Wu, C.I. Bargmann, D.A. Agard, M. Dahan, and M.G.L. Gustafsson
Fast multicolor 3D imaging using aberration-corrected multifocus microscopy
Nature Methods, 10, pp. 60-63, 2013.

2012

B. Hulsken, D. Vossen, and S. Stallinga
High NA diffractive array illuminators and application in a multi-spot scanning microscope
Journal of the European Optical Society Rapid Publucations, 7, 12026, 2012.
S. Stallinga and B. Rieger
The effect of background on the localization uncertainty in single emitter imaging
IEEE International Symposium on Biomedical Imaging, pp. 988-991, 2012.
A. Kostenko, H. Sharma, E. G. Dere, A. King, W. Ludwig, W. van Oel, S. Stallinga, L. J. van Vliet, and S. E. Offerman
Three-dimensional morphology of cementite in steel studied by X-ray phase-contrast tomography
Scripta Materiala, 67, 261-264, 2012.
S. Stallinga and B. Rieger
Position and orientation estimation of fixed dipole emitters using an effective Hermite point spread function model
Optics Express, 20, pp. 5896-5921, 2012.

2011

J. van Heekeren, A. Kostenko, T. Hanashima, H. Yamada, S. Stallinga, S.E. Offerman, and L.J. van Vliet
Characterization of an x-ray phase contrast imaging system based on the miniature synchrotron MIRRORCLE-6X
Medical Physics, 38, 5136-5145, 2011.
L.M. Voortman, S. Stallinga, R.H.M. Schoenmakers, L.J. van Vliet, and B. Rieger
A fast algorithm for computing and correcting the CTF for tilted, thick specimens in TEM
Ultramicroscopy, 111, 1029-1036, 2011.
S. Stallinga
Optical trapping at low numerical aperture
Journal of the European Optical Society Rapid Publications, 6, 11027, 2011.

2010

S. Brinkers, H.R.C. Dietrich, S. Stallinga, J.J. Mes, I.T. Young, and B. Rieger
Single molecule detection of tuberculosis nucleic acid using dark field tethered particle motion
IEEE International Symposium on Biomedical Imaging, pp. 1269-1272, 2010.
S. Stallinga and B. Rieger
Accuracy of the Gaussian Point Spread Function model in 2D localization microscopy
Optics Express, 18, pp. 24461-24476, 2010.

1998-2009

J.M.A. van den Eerenbeemd and S. Stallinga
Compact system description for systems comprising a tilted plane parallel plate
Applied Optics, 46, pp. 319-326, 2007.
S. Stallinga
Energy and momentum of light in dielectric media
Physical Review E, 73, 026606, 2006.
S. Stallinga
Radiation force on a Fabry-Perot slab immersed in a dielectric
Optics Express, 14, pp. 1286-1295, 2006.
P. Tuyls, B. Skoric, S. Stallinga, A.H.M. Akkermans, and W. Ophey
Information-theoretic security analysis of physically uncloneable functions
Financial cryptography and data security, Lecture Notes in Computer Science, 3570, pp. 141-155, 2005.
S. Stallinga
Finite conjugate spherical aberration compensation in high numerical-aperture optical disc read-out
Applied Optics, 44, pp. 7307-7312, 2005
Finite conjugate spherical aberration compensation in high numerical-aperture optical disc read-out: erratum
Applied Optics, 45, pp. 2279-2279, 2006.
S. Stallinga
Compact description of substrate related aberrations in high numerical-aperture optical disc read-out
Applied Optics, 44, pp. 849-858, 2005.
S. Stallinga
The Strehl-ratio for focusing into biaxially birefringent media
Journal of the Optical Society of America A, 21, pp. 2406-2413, 2004.
S. Stallinga
The light distribution close to focus in biaxially birefringent media
Journal of the Optical Society of America A, 21, pp. 1785-1798, 2004.
S. Stallinga, G.W. 't Hooft, and J.J.M. Braat
Comment on `Optimum depth of the information pit on the data surface of a compact disk'
Journal of Modern Optics, 51, pp. 775-778, 2004.
J. Schleipen, B.H.W. Hendriks, and S. Stallinga
Optical Heads
chapter in "Encyclopedia of Optical Engineering", pp. 1667-1693 (Marcel Dekker, New York, 2003).
H.R. Stapert, J. Lub, E.J.K. Verstegen, B.M.I. van der Zande, and S. Stallinga
Photo replicated anisotropic liquid crystalline lenses for aberration control and dual layer read out of optical disks
Advanced Functional Materials, 13, pp. 732-738, 2003. For picture of magazine cover click here .
S. Stallinga
Axial birefringence in high NA optical systems and the light distribution close to focus
Journal of the Optical Society of America A, 18, pp. 2846-2859, 2001.
B.H.W. Hendriks, J. Schleipen, S. Stallinga, and H. van Houten
Optical pick-up for blue optical recording at NA = 0.85
Optical Review, 8, pp. 211-213 (2001) (Optical Design and Fabrication, 2000).
P. van de Witte, S. Stallinga, and J.A.M.M. van Haaren
Viewing angle compensators for liquid crystal displays based on layers with a positive birefringence
Japanese Journal of Applied Physics, 39, pp. 101-108, 2000.
S. Stallinga
Equivalent retarder approach to reflective liquid crystal displays
Journal of Applied Physics, 86, pp. 4756-4766, 1999.
S. Stallinga
Berreman 4´4 matrix method for reflective liquid crystal displays
Journal of Applied Physics, 85, pp. 3023-3031, 1999.
P. van de Witte, J.A.M.M. van Haaren, J. Tuijtelaars, S. Stallinga, and J. Lub
Preparation of retarders with a tilted optical axis
Japanese Journal of Applied Physics, 38, pp. 748-754, 1999.
S. Stallinga, J.M.A. van den Eerenbeemd, and J.A.M.M. van Haaren
Fundamental limitations to the viewing angle of liquid crystal displays with birefringent compensators
Japanese Journal of Applied Physics, 37, pp. 560-570, 1998.

1994-1998

M.M. Wittebrood, Th. Rasing, S. Stallinga, and I. Musevic
Confinement effects on the collective excitations in thin nematic films
Physical Review Letters, 80, pp. 1232-1235, 1998.
S. Stallinga, M.M. Wittebrood, D.H. Luijendijk, and Th. Rasing
Light scattering by thin nematic liquid crystal films
Molecular Crystals Liquid Crystals, 304, pp. 231-234, 1997.
M.M. Wittebrood, D.H. Luijendijk, S. Stallinga, Th. Rasing, and I. Musevic
Thickness-dependent phase transition in thin nematic films
Physical Review E, 54, pp. 5232-5234, 1996.
S. Stallinga, M.M. Wittebrood, D.H. Luijendijk, and Th. Rasing
Theory of light scattering by thin nematic liquid crystal films
Physical Review E, 53, pp. 6085-6092, 1996.
S. Stallinga, J.A.M.M. van Haaren, and J.M.A. van den Eerenbeemd
Influence of surface elasticity on the director profile of nontwisted nematic-liquid-crystal cells
Physical Review E, 53, pp. 1701-1713, 1996.
S. Stallinga and G. Vertogen
Solution of the Oldano-Barbero paradox
Physical Review E, 53, pp. 1692-1700, 1996.
S. Stallinga and G. Vertogen
Quasi-uniaxial treatment of elasticity in smectic C* liquid crystals
Liquid Crystals, 19, pp. 647-651, 1995.
S. Stallinga and G. Vertogen
Elasticity theory of smectic and canonic mesophases
Physical Review E, 51, pp. 536-543, 1995.
S. Stallinga and G. Vertogen
Theory of orientational elasticity
Physical Review E, 49, pp. 1483-1494, 1994.

Publications in conference proceedings

R.P.J. Nieuwenhuizen, S. Stallinga, and B. Rieger
Image resolution in optical nanoscopy
Proceedings SPIE Vol. 8815, 881508 (2013).
Q. Zhao, I. T. Young, R. Schouten, S. Stallinga, K. Jalink, and S. de Jong
mb-FLIM: Model-based fluorescence lifetime imaging
Proceedings SPIE Vol. 8225, 82250M (2012).
M.A. van den Eerenbeemd, F. Zijp, and S. Stallinga
Feasibilty Study on a 4-layer Cover-Incident Near-Field Recording System
Proceedings SPIE Vol. 6282, 2006, Optical Data Storage, Ryuichi Katayama; Tuviah E. Schlesinger, Editors.
F.M.P. Crompvoets, F.J. P. Schuurmans, M.L.M. Balistreri, T.W. Tukker, G.W. 't Hooft, and S. Stallinga
High-Numerical Aperture Holographic Data Storage
Proceedings SPIE Vol. 6252, Holography 2005: International Conference on Holography, Optical Recording, and Processing of Information, Yury Denisyuk, Ventseslav Sainov, Elena Stoykova, Editors.
H.R. Stapert, E.J.K. Verstegen, S. del Valle, B.M.I. van der Zande, S. Stallinga and J. Lub
Photo replicated anisotropic liquid crystalline lenses for aberration control and dual layer read out of optical disks
7th European Conference on Liquid Crystals, 2003.
S. Stallinga, and J.J. Vrehen
Advances in Liquid Crystal Tilt Compensation
Proceedings SPIE Vol. 4342, pp. 465-473, 2001, Optical Data Storage, Terril Hurst, Seiji Kobayashi, Editors.
S. Stallinga, J.J. Vrehen, J. Wals, E. Stapert, and E. Verstegen
Liquid Crystal Aberration Compensation Devices
Proceedings SPIE Vol. 4081, pp. 50-56, 2000, Optical Storage and Information Processing, Han-Ping D. Shieh, Tom D. Milster, Editors.
A.C. Nieuwkerk, G.N. Mol, S. Stallinga, F. Leenhouts, P. van de Witte, J.A.M.M. van Haaren, and D.J. Broer
Economic Wide-Viewing Angle AMLCD using Dual-Domain Photoalignment and a Single Discotic Compensation Film
Society for Information Display Symposium Digest 31, 842, 2000.
P. van de Witte, S. Stallinga, and J.A.M.M. van Haaren
Novel compensation foils for active matrix TN displays
Proceedings International Display Workshop, 1997.
M.T. Johnson, S. Stallinga, A.A. van der Put, and U. Opik
An analytical approach to LC dynamics in ECB and IPS displays
Proceedings International Display Research Conference, p. 17, 1997.
M.T. Johnson, S. Stallinga, A.A. van der Put, and U. Opik
An analytical approach to LC dynamics in ECB and IPS displays
Proceedings International Display Research Conference, p. 17, 1997.
P. van de Witte, S. Stallinga, and J.A.M.M. van Haaren
Novel compensation foils for active matrix TN displays
Proceedings Society for Information Display, p. 687, 1997.

Publications in popular scientific journals & public outreach

P. van de Witte, S. Stallinga
LCD-schermen, profiel van een plat vlak
Natuur & Techniek, 8, pp. 20-29, 1998.
S. Stallinga
De derde dimensie van optische schijven
Fotonica Magazine, 1, pp. 5-9, 2005.
Consultant to ‘Het Klokhuis’ on an item on CDs and DVDs, answering a child’s question as to the reason of  the coloured appearance of optical discs, broadcasted 25 March 2005.

U.S. Patents

P. van de Witte, J.A.M.M. van Haaren, D.J. Broer, S. Stallinga
Compensator, liquid crystal display device, and retardation foil
U.S. 5978055, Filed May 15, 1997.
M.L. Jepsen, S. Stallinga, P.J. Jansen, J.A. Shimizu
Reflective liquid crystal display with integrated compensator for skew angle rotation and birefringence effects
U.S. 6307607, Filed December 21, 1999.
P. van de Witte, S. Stallinga
Double cell Liquid Crystal
U.S. 6437843, Filed April 3, 2000.
J. Wals, J.J. Vrehen, S. Stallinga
Optical wavefront modifier
U.S. 6449236, Filed December 22, 2000.
S. Stallinga, J.J. Vrehen, J. Wals
Optical scanning with aberration correction
U.S. 6496452, Filed December 20, 2000.
P.J. Jansen, S. Stallinga
High Contrast Polarizing Optics For A Color Electro-Optic Display Device
U.S. 6563551, Filed June 28, 2000.
B.H.W. Hendriks, S. Stallinga, H. van Houten
Optical scanning device
U.S. 6567365, Filed September 28, 2000.
J.J. Vrehen, J. Wals, S. Stallinga
Optical scanning head
U.S. 6586717, Filed December 20, 2000.
P. van de Witte, S. Stallinga
Display device
U.S. 6628354, Filed July 10, 2002.
S. Stallinga, P. van de Witte
LCD having a compensator directly on the substrate of adjacent LC cell having particular subpixels
U.S. 6674498, Filed July 11, 2000.
S. Stallinga
Optical scanning device with a selective optical diaphragm
U.S. 6707779, Filed July 2, 2001.
S. Stallinga, J.J. Vrehen, J. Wals
Optical wavefront modifier including a series arrangement of transparent resistors between electrodes and scanning devices including such a modifier
U.S. 6894968, Filed December 19, 2000.
M.T. Johnson, S. Stallinga
Display device
U.S. 6900786, Filed March 4, 1999.
S. Stallinga, P. van de Witte
Liquid crystal display device
U.S. 6933999, Filed November 10, 2003.
B.H.W. Hendriks , J.E. de Vries, S. Stallinga
Dual-layer optical scanner with non-periodic phase structure element of birefringent material for different wavefront aberration compensation of orthogonally polarized radiation beams
U.S. 6947368, Filed December 7, 2001.
B.J. Feenstra, S. Kuiper, S. Stallinga, B.H.W. Hendriks, R.M. Snoeren
Variable focus lens
U.S. 7126903, Filed Januari 24, 2003.
S. Stallinga, A. Kuiper, A. Stek
Tracking system with dual differential signals with fraction of A/C signal added back to D/C signal
U.S. 7385888, Filed August 5, 2003.
S. Stallinga
Optical storage in discs having multiple data layers
U.S. 7391700, Filed October 26, 2004.
S. Stallinga, B. Skoric, P.T. Tuyls, W.G. Ophey, A.M.H. Akkermans
Method and apparatus for detection of a speckle based physically unclonable function
U.S. 7432485, Filed November 24, 2004.
B.H.W. Hendriks, C.T.H.F. Liedenbaum, S. Stallinga, S. Kuiper
Birefringent optical system
U.S. 7440075, Filed March 14, 2005.
S. Stallinga, O.K. Andersen, J. Lee
Method and device for measuring the tilt of an optical disc
U.S.  7457217, Filed March 10, 2004.
S. Stallinga
Apparatus for radial tracking in an optical disc drive using tracking an error signal derived from wobble-induced signal components and/or data-induced signal components of a detector output
U.S. 7616536, Filed May 13, 2004.
A. Mijiritskii, S. Stallinga, B.H.W. Hendriks, S. Kuiper, A.H.J. Immink, T.W. Tukker, C.T.H.F. Liedenbaum
Optical head with switchable diameter of the radiation spot on the radiation detector
U.S. 7706234, Filed November 11, 2005.
S. Stallinga, and L.P. Bakker
Method and apparatus for generating radically and/or azimuthally polarized light beams
U.S. 7715100, Filed July 11, 2005.
D.J.W. Klunder, L.P. Bakker, and S. Stallinga
Device for detection of excitation using a multiple spot arrangement
U.S. 8119995, Filed July 17, 2006.
E.M.P.H. van Dijk, and S. Stallinga
Optical illumination apparatus for illuminating a sample with a line beam
U.S. 8314407, Filed November 19, 2008.
E.M.P.H. van Dijk, S. Stallinga, D.L.J. Vossen, and M.I. Boamfa
Beam shaping without introducing divergence within a light beam
U.S. 8421000, Filed November 20, 2008.